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Preheat oven to 350 degrees F. Grease 16 - 18 standard muffin cups with butter or non-stick cooking spray, or line with paper liners.
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In a medium bowl mix the dry ingredients: all purpose flour, whole wheat flour, cinnamon, cloves, ginger, nutmeg, allspice, baking powder, baking soda and salt.
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In a large mixing bowl whisk the eggs. Add the oil and sugar and whisk until smooth. Add pumpkin puree and whisk until well combined.
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Gradually add dry ingredients to the wet ingredients and stir with a spatula until all the dry ingredients are absorbed. Batter will be thick.
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Fill prepared muffin cups almost level with the rims. Bake for 20 - 22 minutes. Let cool for 5 minutes then un-mold the muffins and cool completely on a rack.